website: http://cb.csail.mit.edu/cb/rck/
Orenstein Y, Wang Y, Berger B. RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete data. Bioinformatics. 2016;32(12):i351-i359. doi:10.1093/bioinformatics/btw259
Part of plachta11b diploma. Compatible with rootless singularity using readonly filesystem.
In case of bugs or questions do not hesitate to write mail (short and simple)
FROM ubuntu:20.04 AS builder
RUN mkdir /source
# wget http://cb.csail.mit.edu/cb/rck/RCK.zip
ADD ./RCK.zip /source/RCK.zip
# wget http://www.cs.toronto.edu/~hilal/rnacontext/RNAplfold_scripts.zip
ADD ./RNAplfold_scripts.zip /source/RNAplfold_scripts.zip
RUN apt-get update && apt-get install -y \
unzip \
make \
g++ \
&& rm -rf /var/lib/apt/lists/*
RUN mkdir /package
WORKDIR /package
RUN unzip /source/RCK.zip
RUN unzip /source/RNAplfold_scripts.zip
RUN mkdir /package/RNAplfold_scripts/bin
RUN cp /package/RNAplfold_scripts/*RNAplfold /package/RNAplfold_scripts/bin
RUN cp /package/RNAplfold_scripts/combine_letter_profiles.py /package/RNAplfold_scripts/bin
WORKDIR /package/RNAcontext
# already compiled for other architecture
RUN make clean
RUN make
FROM ubuntu:20.04
RUN apt-get update && apt-get install -y \
python \
&& rm -rf /var/lib/apt/lists/*
COPY --from=builder /package/ /package/
ADD ./fold.sh /package/RNAplfold_scripts/bin/fold.sh
ENV PATH $PATH:/package/RNAcontext/bin
ENV PATH $PATH:/package/RNAplfold_scripts/bin
CMD [ "rnacontext" ]
Content type
Image
Digest
Size
40.5 MB
Last updated
about 6 years ago
docker pull plachta11b/rck:0.1