plachta11b/zagros repository overview

⁠Zagros

⁠Cite source

website: http://smithlabresearch.org/software/zagros/⁠

Bahrami-Samani E, Penalva LO, Smith AD, Uren PJ. Leveraging cross-link modification events in CLIP-seq for motif discovery. Nucleic Acids Res. 2015;43(1):95-103. doi:10.1093/nar/gku1288

⁠Info

Part of plachta11b diploma. Compatible with rootless singularity using readonly filesystem.

⁠Contact

In case of bugs or questions do not hesitate to write (short and simple) mail⁠

⁠Dockerfile

#FROM ubuntu:20.04 -> extractDEs.cpp:482:22: error: cannot bind rvalue
FROM ubuntu:16.04

ADD zagros-1.0.0.tar.gz /

RUN mv /zagros-1.0.0 /zagros
WORKDIR /zagros

RUN apt-get update && apt-get install -y \
	g++ \
	make \
	&& rm -rf /var/lib/apt/lists/*

RUN make all
RUN make install

ENV PATH $PATH:/zagros/bin

# extractDEs  thermo  zagros
CMD ["zagros"]