plantgenomics/psiclass repository overview

FROM --platform=linux/amd64 ubuntu:22.04

ENV TZ=America/New_York
ENV DEBIAN_FRONTEND=noninteractive

RUN apt-get -y update
RUN apt-get -y install git perl python3 less vim wget time zlib1g zlib1g-dev lzma-dev \
        libncurses5-dev libcurl4-nss-dev liblzma-dev libncursesw5-dev make unzip zip build-essential \
        gcc g++ cmake ca-certificates libbz2-dev xz-utils htop autoconf automake binutils bison flex \
        gettext libtool make patch pkg-config p7zip-full p7zip r-base curl sudo python3-pip
RUN apt-get clean all
RUN sudo apt-get autoclean autoremove

RUN mkdir -p /softwares && cd /softwares && \
        git clone https://github.com/mbeavitt/PsiCLASS.git && \
        cd PsiCLASS && \
        make
        
ENV PATH=$PATH:/softwares/PsiCLASS