plaquette/julia_helper repository overview

mkdir ArgParse_CSV_DataFrames_FileIO
cd ArgParse_CSV_DataFrames_FileIO && julia -e 'using Pkg; Pkg.activate("."); Pkg.add(["ArgParse", "CSV", "DataFrames", "FileIO"]);'

FROM julia:latest
WORKDIR /env
COPY . .
RUN julia -e 'using Pkg; Pkg.activate("."); Pkg.instantiate(); Pkg.precompile()'
COPY entrypoint.sh /entrypoint.sh
RUN chmod +x /entrypoint.sh
ENTRYPOINT ["/entrypoint.sh"]

#!/bin/bash

# Set JULIA_PROJECT environment variable
export JULIA_PROJECT="/env"

# If no arguments are provided, start an interactive Julia session with the specified packages loaded
if [ "$#" -eq 0 ]; then
    julia -i --eval "using Pkg; Pkg.activate(\"/env\"); using ArgParse; using CSV; using DataFrames; using FileIO;" --banner=no
else
    # Execute the provided command with arguments
    exec "$@"
fi

docker build -t plaquette/julia_helper:ArgParse_CSV_DataFrames_FileIO .

docker push plaquette/julia_helper:ArgParse_CSV_DataFrames_FileIO  

docker run -it plaquette/julia_helper:ArgParse_CSV_DataFrames_FileIO

docker run -it -v "$(pwd):/scripts" plaquette/julia_helper:ArgParse_CSV_DataFrames_FileIO julia /scripts/wrapper.jl --i=/scripts/ref_coli.fa --k=10 --w=100