propenster/debigenic repository overview

⁠debigenic

⁠debigenic is a genomic and bioinformatics pipeline for geneomic exploration and analysis.

It runs on a Linux (Debian Distro) Ubuntu 22.04 and comes with genomic exploration tools including

• gatk 4.4.0 package
• bowtie 1.3.1
• bwa 0.7.17-r1188
• miniconda3
• perl
• bcf tools
• fastqc
• samtools
• htslib
• bedtools
• clustal
• blast
• hmmer
• mumer
• phylip
• QuEST
• VELVET

⁠To get started

⁠1 Install docker desktop⁠

⁠2. Pull debigenic image from DockerHub onto your PC.

docker pull propenster/debigenic

⁠3. Run the debigenic container

docker run -it propenster/debigenic bin/bash