pupster90/my_scanpy repository overview

This is my version of scanpy from the scanpy workshop at ucsf. To get it running install docker and the type the following lines of code in your terminal:

docker pull pupster90/my_scanpy
docker run -it -p 8888:8888 --user root --name scanpy pupster90/my_scanpy /bin/bash

this will will launch the docker container. To launch Jupyter type:

cd root
jupyter notebook

This will open the jupyter notebook inside the folder /root. Now go to localhost:8888 to see your jupyter notebook. To launch the tutorial go to, localhost:8888/notebooks/scanpy-demo-czbiohub/10X_PBMC.ipynb