qbicpipelines/rnadeseq repository overview

⁠qbicsoftware/rnadeseq

Downstream differential gene expression analysis with DESeq2 package.

⁠Introduction

The pipeline is built using Nextflow⁠, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.

⁠Documentation

The qbicsoftware/rnadeseq pipeline comes with documentation about the pipeline, found in the docs/ directory:

1. Installation⁠
2. Pipeline configuration
   • Local installation⁠
   • Adding your own system config⁠
   • Reference genomes⁠
3. Running the pipeline⁠
4. Output and how to interpret the results⁠
5. Troubleshooting⁠

⁠Credits

qbicsoftware/rnadeseq was originally written by Gisela Gabernet (@ggabernet) and Silvia Morini (@silviamorins), at QBiC.