qifp/prediction_engine repository overview

Command line to Train: Rscript QIFP_LassoRScript2b.R -t /tmp/_features.csv /tmp/_clinicaldata.csv /tmp/outputs /tmp/predconfig.ini /tmp/excludeconfig.csv

Command line to Test: Rscript QIFP_LassoRScript2b.R -p /tmp/_features.csv /tmp/_clinicaldata.csv /tmp/outputs /tmp /tmp/predconfig.ini /tmp/excludeconfig.csv

predconfig.ini:
[model]
modelType=glmnet
responseType=binomial
targetOutput=diagnosis

[glmnet]
numFolds=10
standardize=FALSE
alpha=1
seed=500

excludeconfig.csv:
exclude_feature
Patient Name
DSOSeries UID