Official Docker images for Novae: a graph-based foundation model for spatial transcriptomics data.
2.0K
This hub contains Novae images with different setups.
The Docker images are available for Linux only (for now).
For instance, you can install the Novae images as follows:
# from a python image (CPU)
docker pull quentinblampey/novae:latest
# from a pytorch image with cuda 12.9
docker pull quentinblampey/novae:latest-cuda12.9
Or choose a specific version and/or extras.
Our article is published in Nature Methods. You can cite Novae as below:
Blampey, Q., Benkirane, H., Bercovici, N. et al. Novae: a graph-based foundation model for spatial transcriptomics data.
Nat Methods (2025). https://doi.org/10.1038/s41592-025-02899-6
Content type
Image
Digest
sha256:08fa6c82f…
Size
3.2 GB
Last updated
15 days ago
docker pull quentinblampey/novae