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rajireturn/fairdatapoint

By rajireturn

•Updated over 7 years ago

Docker image to create Fair Data point

Image
1

176

rajireturn/fairdatapoint repository overview

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⁠Summary

FAIRDataPoint is a REST api for creating, storing and servering FAIR metadata. The metadata contents are in this api are generated semi-automatically according to the FAIR Data Point software specification⁠ document. In the current version of api we support GET, POST and PATCH requests.

⁠Deployment machine's requirement
  • JRE 1.8
  • Tomcat 7 or higher
⁠How to Install

Make sure your deployment machine meets the requirements listed above. Deploy the fdp.war file (download link can be found here⁠) in your deployment machine's tomcat server. The instructions for deploying .war in the tomcat server can be found in this link⁠.

⁠API documentation

FAIRDataPoint (fdp) api comes with an embedded [swagger document] (http://swagger.io/⁠), the details of api calls can be found here. To access the fdp swagger document please visit the following url via web browser

<TOMCAT_BASE_URL>/fdp/swagger-ui.html

An example swagger doc uri : http://localhost:8084/fdp/swagger-ui.html⁠

In the current implementation the REPOSITORY layer metadata is automatically created, however this metadata can be updated through PATCH calls. The metadata of other layers can be stored in the FAIRDataPoint through POST calls. The table below gives an overview of api calls allowed on different FAIR metadata layers.

Metadata layerGETPOSTPATCH
RepositoryYesNoYes
(Example request body⁠)
CatalogYesYes
(Example request body⁠)
No
DatasetYesYes
(Example request body⁠)
No
DistributionYesYes
(Example request body⁠)
No
⁠List of active FAIRDataPoints
Short name (dct:title)DescriptionLocation
ID card FAIR Data Point (beta)FDP containing dummified data from Biobanks and RegistriesLink⁠
DTL FAIR Data Point (beta)FDP for the fairification doc (VCF); fantom5; GeneDisease/DisGeNetLink⁠
WikiPathways FDP (beta)FDP with biological pathwaysLink⁠

Tag summary

Content type

Image

Digest

Size

164 MB

Last updated

over 7 years ago

docker pull rajireturn/fairdatapoint:develop