raufs/lsabgc repository overview

- If running lsaBGC v1.56 (current). The lsaBGC Docker image features:

• lsaBGC = 1.56 (+ PGAP HMM database downloaded on 09/27/2025)
• GECCO = 0.9.6 (DEFAULT SOFTWARE FOR BGC PREDICTIONS)
• antiSMASH = 8.0.4 (+ databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.9 (+ Pfam database downloaded on 09/27/2025)
• OrthoFinder = 2.5.4
• Panaroo = 1.5.2

- If running lsaBGC v1.55. The lsaBGC Docker image features:

• lsaBGC = 1.55 (+ PGAP HMM database)
• GECCO = 0.9.8 (DEFAULT SOFTWARE FOR BGC PREDICTIONS)
• antiSMASH = 7.0.1 (+ databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.9 (+ Pfam database)
• OrthoFinder = 2.5.4
• Panaroo = 1.5.2

- If running lsaBGC v1.53. The lsaBGC Docker image features:

• lsaBGC = 1.53 (+ PGAP HMM database downloaded on 05/31/2024)
• GECCO = 0.9.8 (DEFAULT SOFTWARE FOR BGC PREDICTIONS)
• antiSMASH = 7.0.1 (+ databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.9 (+ Pfam database downloaded on 07/31/2024)
• OrthoFinder = 2.5.4
• Panaroo = 1.5.0

- If running lsaBGC v1.52. The lsaBGC Docker image features:

• lsaBGC = 1.52 (+ PGAP HMM database downloaded on ~01/04/2024)
• Panaroo = 1.3.4
• GECCO = 0.9.8 (DEFAULT SOFTWARE FOR BGC PREDICTION)
• antiSMASH = 7.0.1 (- MEME dependency; + databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.4 (+ Pfam database downloaded on ~01/04/2024)
• SonicParanoid = 2.0.2 (+ Pfam database setup on ~01/04/2024)
• OrthoFinder = 2.5.4

- If running lsaBGC v1.50. The lsaBGC Docker image features:

• lsaBGC = 1.50 (+ PGAP HMM database downloaded on ~10/22/2023)
• Panaroo = 1.3.4
• GECCO = 0.9.6 (DEFAULT SOFTWARE FOR BGC PREDICTION)
• antiSMASH = 7.0.1 (- MEME dependency; + databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.4 (+ Pfam database downloaded on ~10/22/2023)
• SonicParanoid = 2.0.2 (+ Pfam database setup on ~10/22/2023)
• OrthoFinder = 2.5.4

- If running lsaBGC v1.40. The lsaBGC Docker image features:

• lsaBGC = 1.40 (+ PGAP HMM database downloaded on ~08/25/2023)
• GECCO = 0.9.6 (DEFAULT SOFTWARE FOR BGC PREDICTION)
• antiSMASH = 6.1.1 (- MEME dependency; + databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.4 (+ Pfam database downloaded on ~08/25/2023)
• SonicParanoid = 2.0.2 (+ Pfam database setup on ~08/25/2023)
• OrthoFinder = 2.5.4

- If running lsaBGC v1.38. The lsaBGC Docker image features:

• lsaBGC = 1.38 (+ PGAP HMM database downloaded on ~06/07/2023)
• GECCO = 0.9.6 (DEFAULT SOFTWARE FOR BGC PREDICTION)
• antiSMASH = 6.1.1 (- MEME dependency; + databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.4 (+ Pfam database downloaded on ~06/07/2023)
• SonicParanoid = 2.0.2 (+ Pfam database setup on ~06/07/2023)
• OrthoFinder = 2.5.4

- If running lsaBGC v1.37.1. The lsaBGC Docker image features:

• lsaBGC = 1.37.1 (+ PGAP HMM database downloaded on 05/14/2023)
• GECCO = 0.9.6 (DEFAULT SOFTWARE FOR BGC PREDICTION)
• antiSMASH = 6.1.1 (- MEME dependency; + databases; REQUEST-ABLE AND AUTOMATIC!)
• BiG-SCAPE = 1.1.4 (+ Pfam database downloaded 05/14/2023)
• OrthoFinder = 2.5.4