road2stat/ash-docker repository overview

⁠ash-docker

ash-docker provides a Docker image for reproducing the simulation, analysis, and paper of the ash⁠ project, It is also a production-ready environment for running ashr⁠. The Docker image is built on ash-packrat⁠.

⁠Installation

• Install Docker⁠.

• Download the ash-docker image and run a container named ash:

    docker pull road2stat/ash-docker
  

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⁠Reproduce the simulation studies, analysis, and paper

Run make to generate the simulation results, analysis, paper, and make them available in a folder accessible from the host:

    cd /home/user/
    mkdir ash-docker-share
    docker run -v /home/rstudio/:/home/user/ash-docker-share --name ash road2stat/ash-docker make

⁠Reproduce the analysis interactively

    docker run -d -p 8787:8787 --name ash road2stat/ash-docker

• Go to http://localhost:8787⁠, use rstudio/rstudio to log in to the RStudio Server. Compile and interact with the R Markdown documents in the analysis/ directory.

⁠Clean Up

• To stop and remove the running container ash:

    docker stop ash
    docker rm ash
  

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• To remove the ash-docker image:

    docker rmi road2stat/ash-docker
  

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