An interactive explorer for single-cell transcriptomics data
368
Run cellxgene in a docker container. This is a multi-platform image built for linux/amd64 and linux/arm64.
# run in working directory
docker run --rm -p 5005:5005 -v ${PWD}:/work royfrancis/cellxgene:latest launch --host 0.0.0.0 anndata.h5ad
This is the Dockerfile used to build this image. This is slightly updated from the one available on GitHub.
FROM ubuntu:22.04
ENV LC_ALL=C.UTF-8
ENV LANG=C.UTF-8
RUN apt-get update && \
apt-get install -y build-essential libxml2-dev python3-dev python3-pip zlib1g-dev python3-requests python3-aiohttp && \
python3 -m pip install --upgrade pip && \
pip3 install cellxgene==1.2.0
RUN mkdir /work
WORKDIR /work
ENTRYPOINT ["cellxgene"]
2024 • Roy Francis
Content type
Image
Digest
sha256:389cc6018…
Size
493.3 MB
Last updated
over 2 years ago
docker pull royfrancis/cellxgene