rpribeiro/pygomodo repository overview

⁠Quickstart

We recommend to use pyGOMoDo with Docker (here⁠). The container deploys the pyGOMoDo Jupyter environment.

⁠Running pyGOMoDo docker container (reading and writing local directories)

docker run -d -t -p 8886:8885 -v $PWD:$PWD:Z --name pygomodo_production rpribeiro/pygomodo

Then open the the following link on the browser:

localhost:8886

⁠How to install Docker

Instructions to install Docker here⁠.

⁠Running pyGOMoDo locally

The instructions to install pyGOMoDO here⁠.

⁠Documentation

Documentation can be found online on ReadTheDocs⁠.

⁠Developed on behalf of

⁠Funded by

EU Human Brain Project (SGA1 and SGA2): This open-source software was developed in part in the Human Brain Project funded by the European Union's Horizon 2020 Framework Programme for Research and Innovation under Specific Grant Agreements No 720270 and No. 78907 (Human Brain Project SGA1 and SGA2).

⁠Cite Us

Please cite us if you use or adapt the pyGOMoDo for your research project,e us.

@article{10.1093/bioinformatics/btad294,
    author = {Ribeiro, Rui P and Giorgetti, A},
    title = "{pyGOMoDo: GPCRs modeling and docking with python}",
    journal = {Bioinformatics},
    year = {2023},
    doi = {10.1093/bioinformatics/btad294},
    url = {https://doi.org/10.1093/bioinformatics/btad294},
}

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