rtisma1/song-server repository overview

⁠SONG

Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.

Project containing both the SONG microservice and CLI client. Both are written using JAVA 8 and Spring Boot.

⁠Build

$ mvn clean package

⁠Running

⁠Command-line

The source can be built and run using maven.

$ git clone [email protected]:icgc-dcc/SONG.git
$ cd SONG/song-server
$ mvn spring-boot:run -Dspring-boot.run.profiles=dev,test

Both the server and client when compiled and built produce uber jars which can be run easily from the command line.

$ java -jar song-server-0.1.1-SNAPSHOT.jar  --spring.profiles.active=dev,test

⁠API

The server provides swagger docs documenting the API.

When running locally they can be accessed here: http://localhost:8080/swagger-ui.html⁠

⁠Dockerhub Configuration

1. Edit build configurations by selecting the Builds tab at the top, then click Build Configuration
2. Create a new build rule by clicking the + sign beside the BUILD RULES text
3. Edit the configuration as follows: Source Type: branch Source: develop Docker Tag: develop Dockerfile Location: Dockerfile Build Context: / Autobuild is set to the ON position Build Caching is set to the ON position
4. Then save the configuration

⁠Notes

When running with the secure profile enabled, an oauth2 server is needed.

Test