scharch/sonar-base repository overview

This container is based on the ubuntu:lastest image from January 2016 (6cc0fc2a5ee3). To this I have:

-installed BioPerl -installed Biopython and the ete2 library -installed R, plus the ggplot2, grid, and MASS packages -installed NCBI BLAST+, MUSCLE, USEARCH, ClustalO, DNAML, BEAST2, and the Fastx-Toolkit

plus dependencies for each and installation tools such as pip

I have also run the initial setup script for SONAR and configured the path variables so that SONAR scripts can be called from a project directory without needing the full path.