sciomicslab/fastqc repository overview

Syntax to run: docker run -v $(PWD):/fastqc sciomicslab/fastqc fastqc MYFILE_R1_001.fastq.gz where $(PWD) can also be a specific path.

This runs FastQC against the specified .fastq, .fq, or gzipped fastq file, and leaves the output in the directory (zip and html file with results).