scitran/dcm2nii repository overview

⁠scitran/dcm2nii

This Dockerfile will create a MRICRON Docker image that can execute dcm2nii.

⁠Options

Options are set in dcm2nii.ini. Current defaults are set and copied into the container on runtime.

⁠Build the Image

To build the image, either download the files from this repo or clone the repo:

./build.sh

⁠Example Usage

To run dcm2nii from this image you can do the following:

docker run --rm -ti \
    -v </path/to/input/data>:/flywheel/v0/input \
    -v </path/to/output>:/flywheel/v0/output \
    scitran/dcm2nii <optional_flags>