shengwei/das_tool repository overview

docker run -t -d --rm 
           -v /etc/group:/etc/group:ro -v /etc/passwd:/etc/passwd:ro 
           -u $(id -u $USER):$(id -g $USER) 
           -v $PWD:/mnt 
           --name dastool shengwei/das_tool:latest

docker exec dastool /bin/bash -c "cp -r /DAS_Tool/current/sample_* ." 

# sample 1
cmd1="DAS_Tool -i sample_data/sample.human.gut_concoct_scaffolds2bin.tsv,sample_data/sample.human.gut_maxbin2_scaffolds2bin.tsv,sample_data/sample.human.gut_metabat_scaffolds2bin.tsv,sample_data/sample.human.gut_tetraESOM_scaffolds2bin.tsv -l concoct,maxbin,metabat,tetraESOM -c sample_data/sample.human.gut_contigs.fa -o sample_output/DASToolRun1
         --write_bin_evals 1 
         --create_plots 1 
         --write_bins 1 
         --threads 20"
echo $cmd1
docker exec dastool /bin/bash -c "$cmd1"

# sample2 
CMD2="DAS_Tool -i sample_data/sample.human.gut_concoct_scaffolds2bin.tsv,sample_data/sample.human.gut_maxbin2_scaffolds2bin.tsv,sample_data/sample.human.gut_metabat_scaffolds2bin.tsv,sample_data/sample.human.gut_tetraESOM_scaffolds2bin.tsv -l concoct,maxbin,metabat,tetraESOM -c sample_data/sample.human.gut_contigs.fa -o sample_output/DASToolRun2 --threads 2 --score_threshold 0.6 --proteins sample_output/DASToolRun1_proteins.faa
         --write_bin_evals 1 
         --create_plots 1 
         --write_bins 1 
         --threads 20"
docker exec dastool /bin/bash -c "$cmd2"