shinejh0528/snpeff repository overview

⁠snpeff

⁠snpeff folder path : /usr/src/snpeff/

⁠Version info

⁠Above 5.2f contains tabix to generate vcf.gz.tbi

⁠

⁠Tools

⁠tabix

⁠tabix generates vcf.gz index file (vcf.gz.tbi)

⁠cmd ex)

# [path].vcf.gz
bgzip -c .vcf
# or 
bgzip -c .vcf > .vcf.gz

# [path].vcf.gz.tbi
tabix -p vcf -f .vcf.gz