shl198/rnaseq_count repository overview

FROM shl198/template MAINTAINER Shangzhong Li ([email protected]⁠)

CMD ["date"] ENTRYPOINT ["python", "/root/Code/NGS-Pipeline/RNAseq_count.py"]

⁠star-2.6, samtools-1.7, htseq-0.9.1

RUN mkdir ~/Code && cd ~/Code &&
git clone --single-branch -b ngs_b1 https://github.com/LewisLabUCSD/NGS-Pipeline.git⁠ &&
conda install -c bioconda star && \
conda install -c bioconda samtools &&
conda install -c bioconda htseq