shl198/salmon_quant repository overview

The way to run this pipeline:

1. download the parameter file https://github.com/LewisLabUCSD/NGS-Pipeline/blob/ngs_b1/Parameters/Salmon_quant.yaml⁠
2. define all the parameters in the yaml file.
3. run the pipeline in terminal with command: docker run -v /data:/data salmon_quant:latest /path/to/the/parameter/file/Salmon_quant.yaml
4. You need to modify the parameter -v /data:/data.