shl198/susie repository overview

FROM ubuntu:18.04

MAINTAINER ShangzhongLi [email protected]⁠

ENV PATH /opt/miniconda/bin:$PATH ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 ENV PERL5LIB=$PERL5LIB:/opt/cpanm/lib/perl5

⁠install conda

SHELL ["/bin/bash", "-c"] RUN apt-get update && apt-get install -y wget libpng-dev libssl-dev
gcc make libssl1.0.0 &&
cd opt &&
wget --quiet https://repo.continuum.io/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh⁠ &&
chmod 755 Miniconda3-4.7.12.1-Linux-x86_64.sh &&
./Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p /opt/miniconda &&
rm Miniconda3-4.7.12.1-Linux-x86_64.sh && \
eval "$(/opt/miniconda/bin/conda shell.bash hook)" &&
conda install -y -c anaconda cmake &&
conda install -y -c anaconda git &&
conda install -y -c conda-forge r-essentials r-base=4.1.0 &&
R -e 'install.packages("susieR",repos="https://archive.linux.duke.edu/cran/⁠")'

CMD ["/bin/bash"]