shl198/template repository overview

FROM continuumio/miniconda MAINTAINER Shangzhong Li ([email protected]⁠)

CMD ["date"]

⁠ruffus-2.6.3, fastqc-0.11, sarge-0.1.4, trimmomatic-0.38, pandas-0.23

RUN apt-get update && conda install -c bioconda ruffus &&
apt-get install -y bsd-mailx &&
conda install natsort &&
conda install -c conda-forge sarge &&
conda install -c bioconda trimmomatic &&
conda install -c bioconda fastqc &&
conda install -c conda-forge pandas &&
conda install -c conda-forge pyyaml &&
conda install -c bioconda multiqc