simexp/minc-toolkit repository overview

The minc-toolkit is a library of low-level manipulation tools for medical imaging (mostly MRI) data. See the official minc-toolkit page⁠ for more info.

The Tags in this repository represent version of the minc toolkits, here are the dokerfiles used to build them:

• 1.9.15⁠ is built over ubuntu 16.04

• 1.9.2⁠ is built over ubuntu 12.04

• 1.9.11⁠ is built over ubuntu 16.04

On linux, you need to have docker installed, and you need to be part of the docker group⁠. Run the following command to start bash terminal with the minc toolkit:

docker run -i -t --rm --name minc-toolkit -v $HOME:$HOME --user $UID:$GID simexp/minc-toolkit /bin/bash 

If you are using tag 1.9.2 you will also need to source the minctool inside the image before you can use it with the source /opt/minc-itk4/minc-toolkit-config.sh command

Finally, if somehow the process did not exit properly and docker complains that minc-toolkit is already running when you restart it, type:

docker stop minc-toolkit
docker rm minc-toolkit