sinanugur/mirmachine repository overview

⁠MirMachine

Official Docker repo of MirMachine.

The project's GitHub https://github.com/sinanugur/MirMachine⁠

Our documentation https://mirmachine.readthedocs.io/en/latest/⁠

⁠Quick start example

docker run -it --rm -v "$(pwd):/app" sinanugur/mirmachine:latest MirMachine.py --help

To run on example dataset with 20 cores:

docker run -it --rm --cpus 20 -v "$(pwd):/app" sinanugur/mirmachine:latest MirMachine.py -n Caenorhabditis -s Caenorhabditis_elegans --genome sample/genomes/ce11.fa --cpu 20

See our documentation for detailed explanations: https://mirmachine.readthedocs.io/⁠