sje30/waverepo repository overview

⁠waverepo

Retinal wave data repository⁠

This repository contains the source code for our 2014 paper⁠.

⁠Data files

The hdf5/ folder contains the current data files.

⁠Paper

Material relevant to the paper is in paper/ folder. The paper is written as a reproducible research document. See the README in that folder.

⁠Peer review

Gigascience⁠ allows for open peer review, so you can see all the peer-review reports and responses⁠. In particular, note the supplementary pdf⁠ sent by Christophe Pouzat, which demonstrates an advantage of submitting your code - he was able to show alternative methods for presenting the results.

⁠Docker

We now have a docker container for this project:

docker run -d -p 8787:8787 sje30/waverepo

Then visit the web page to start R (username and password are "rstudio"):

http://localhost:8787/        ## linux
http://192.168.59.103:8787/   ## mac, windows users

Inside the waverepo/paper folder you can see the .Rnw file and the resulting pdf which you can view or regenerate.