skptic/nf-toxomix repository overview

⁠NF-toxomix

Pipeline for toxicology predictions based on transcriptomic profiles.

⁠Introduction

NF-toxomix: Pipeline for toxicology predictions based on transcriptomic profiles

The pipeline is built using Nextflow⁠, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

⁠Documentation

The NF-toxomix pipeline comes with documentation about the pipeline, found in the docs/ directory:

1. Installation⁠
2. Pipeline configuration
   • Local installation⁠
   • Adding your own system⁠
3. Running the pipeline⁠
4. Output and how to interpret the results⁠
5. Troubleshooting⁠

⁠Credits

This pipeline was written by Evan Floden (skptic⁠) at Center for Genomic Regulation (CRG)⁠.