snoopycrimecop/omero-web repository overview

⁠OMERO.web Docker

A CentOS 7 based Docker image for OMERO.web.

Also see SUPPORT.md⁠

⁠Standalone image: omero-web-standalone

The quickest way to obtain a running OMERO.web server is to use the standalone image⁠ which uses the WhiteNoise package⁠ to avoid the need for Nginx. This image also includes these OMERO.web plugins with a default configuration:

• figure⁠
• iviewer⁠
• mapr⁠
• parade⁠

The following plugins are installed but disabled:

• fpbioimage⁠
• autotag⁠
• tagsearch⁠

To enable them or to change the configuration of a default plugin see the relevant plugin documentation.

To run the Docker image you can set a single OMERO.server to connect to by defining OMEROHOST:

docker run -d --name omero-web \
    -e OMEROHOST=omero.example.org \
    -p 4080:4080 \
    openmicroscopy/omero-web-standalone

Alternative all configuration options can be set using environment variables, for example:

docker run -d --name omero-web \
    -e CONFIG_omero_web_server__list='[["omero.example.org", 4064, "omero"]]' \
    -e CONFIG_omero_web_debug=true \
    -p 4080:4080 \
    openmicroscopy/omero-web-standalone

⁠Minimal OMERO.web image: omero-web

omero-web⁠ is a minimal OMERO.web image which requires additional configuration for serving Django static files. For example, you can use https://github.com/dpwrussell/omero-nginx-docker⁠

⁠Configuration

All OMERO configuration properties⁠ can be set be defining environment variables CONFIG_omero_property_name=. Since . is not allowed in a variable name . must be replaced by _, and _ by __.

Additional configuration files for OMERO can be provided by mounting files into /opt/omero/web/config/. Files ending with .omero will be loaded with omero load.

See https://github.com/openmicroscopy/omero-server-docker⁠ for more details on configuration.

⁠Default volumes

• /opt/omero/web/OMERO.web/var: The OMERO.web var directory, including logs

⁠Exposed ports

• 4080