snystrom/memes_docker repository overview

⁠{memes} Docker container

A docker container for motif analysis in R using the memes⁠ packge. Currently, this container is build from the development branch of bioconductor_docker_meme⁠, which builds a bioconductor docker image + the most current MEME Suite version. This container additionally contains an install of the most recent {memes} package along with all dependencies. It can be used to test out {memes} or to perform containerized data analysis.

To get latest container version

docker pull snystrom/memes_docker:devel

To launch the container for demo purposes:

docker run -e PASSWORD=<password> -p 8787:8787 snystrom/memes_docker:devel

To launch the container and mount an analysis directory

docker run -e PASSWORD=<password> -p 8787:8787 -v <path>/<to>/<project>:/tmp/<project> snystrom/memes_docker:devel

Connect to the instance by visiting: localhost:8787 in your web browser. Username: rstudio, Password: <password> defined above.

⁠Licensing

The code for generating this container is licensed under an MIT License⁠.

The MEME Suite is licensed under a limited, non-commercial use license. It is free for non-profit use, but for-profit users should purchase a license. See the MEME Suite Copyright Page⁠ for details.