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sparkvilla/rnaseq

By sparkvilla

•Updated over 7 years ago

Image to run rnaseq pipeline on a cloud infrastructure (UZH only)

Image
0

1.0K

sparkvilla/rnaseq repository overview

This image is based on Ubuntu:16.04.

Bioinformatic tools installed include:

  • Fastqc=0.11.8
  • Trimomatic=0.35
  • Sortmerna=2.0
  • Multiqc=1.6
  • STAR=2.6.0
  • Samtools=1.2
  • Bedtools=2.25.0
  • R=3.4.1
  • HTseq=0.5.4p3
  • Deseq2=3.4.1

Workflow manager:

  • Snakemake=5.3.0
  • gc3pie

Tag summary

Content type

Image

Digest

Size

1.3 GB

Last updated

over 7 years ago

docker pull sparkvilla/rnaseq