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sparkvilla/tnseq

By sparkvilla

•Updated almost 8 years ago

Image to run a Tnseq pipeline

Image
0

870

sparkvilla/tnseq repository overview

This image contains a gc3pie application (gtn) to run a Tnseq pipeline on a Cloud infrastructure (UZH only) or on a Localhost. More details can be found at Gtnseq⁠ repository.

** Bioinformatics related tools **

  • trimmomatic
  • FastQC
  • TnSeq (from khturner/tn-seq image)

** Workflow / Parallelization tools **

  • Snakemake
  • Gc3pie

Tag summary

Content type

Image

Digest

Size

1019 MB

Last updated

almost 8 years ago

docker pull sparkvilla/tnseq