sparkvilla/tnseq repository overview

This image contains a gc3pie application (gtn) to run a Tnseq pipeline on a Cloud infrastructure (UZH only) or on a Localhost. More details can be found at Gtnseq⁠ repository.

** Bioinformatics related tools **

• trimmomatic
• FastQC
• TnSeq (from khturner/tn-seq image)

** Workflow / Parallelization tools **

• Snakemake
• Gc3pie