starlitnightly/omicverse
Docker images for omicverse
Image
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starlitnightly/omicverse repository overview
OmicVerse is the fundamental package for multi omics included bulk ,single cell and spatial RNA-seq analysis with Python. For more information, please read our paper: OmicVerse: a framework for bridging and deepening insights across bulk and single-cell sequencing
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py{PYTHON_VERSION}-cu{CUDA_VERSION}-latest: All dependencies of omicverse
- Updated weekly Sunday at 05:00 PST
- We currently build images for
PYTHON_VERSION=[310]andCUDA_VERSION=[118, 121]
Tutorials
GPU image
system:Windows WSL,Linuxwith NVIDIAversion of docker: larger than19.3installation:
#create a folder to connect the docker and host
mkdir '/path/analysis'
#path is the folder where you store your data locally
local_data_path='/path/analysis'
#cuda121
docker run -it -v "$local_data_path":/analysis -p 8899:8899 --gpus all starlitnightly/omicverse:py310_cu121_latest
#cuda118
docker run -it -v "$local_data_path":/analysis -p 8899:8899 --gpus all starlitnightly/omicverse:py310_cu118_latest
CPU image
system:macWindows WSL,Linuxwithout NVIDIAversion of docker: Noneinstallation:
#create a folder to connect the docker and host
mkdir '/path/analysis'
#path is the folder where you store your data locally
local_data_path='/path/analysis'
#cuda121
docker run -it -v "$local_data_path":/analysis -p 8899:8899 starlitnightly/omicverse:py310_cpu_latest
Tag summary
Content type
Image
Digest
sha256:ffa2a1550…
Size
1.5 GB
Last updated
almost 2 years ago
docker pull starlitnightly/omicverse:py310_cpu_latest