stunts/limonium_data_analyses repository overview

This image should be used with mounted volumes in order to be able to dynamically use pre-existing data, and easily retrieve obtained results. Below is an example usage:

docker run -v /data/Limonium/analyses_infiles:/RRL/infiles -v /data/Limonium/analyses_outfiles:/RRL/outfiles -i -t stunts/limonium_data_analyses:general_002

As can be seen in the example, both the input and output data directories are mounted as volumes. Once you are running a shell inside the container, you can start the analyses by running make. You can look at t he first 20 lines of the Makefile to understand which variables are worth passing to the make command, but at the very least, you should pass run_name=your_dataset_name, where your_dataset_name is the directory inside /data/Limonium/analyses_infiles containing your input data.