suyanan/python repository overview

⁠docker

⁠dockerfiles

These dockerfiles are related to bioinformatics software and basic environments, and most images are based on alpine:3.9. Mores refer to mydockerhub⁠

⁠R

from r-base , create some libraries.

⁠Python

• python
• python-pip
• python-pip-libs

⁠mapper

• minimap2
• ngmlr

⁠svcaller

• sniffles

⁠methylationcaller

• nanopolish(todo)

⁠tools

• samtools
• bedtools

⁠useful pipeline

• fastq_stat
• sv_annotation
• sv_report

---

Tricks:

1. When installing some packages in docker container, you can check the related libs whether exits in alpinelinux⁠.
2. docekr build -t image_name .
3. retry the software installation, by "docker run -it --name container_name image_name"
4. check the container, by "docker cp", to debug the target project.

---

end