tale88/phylotree repository overview

⁠nf-PhyloTree

⁠Generate IBS-based, bootstrapped phylogenetic trees

⁠Dependencies

To run the pipeline, you need to have installed:

1. Graphlan⁠
2. Python 2.7 with the packages colormap, xml and biopython⁠
3. plink v1.90⁠
4. R⁠ with tidyverse⁠
5. phylip⁠

⁠Running the pipeline

The pipeline can be run as a regular nextflow workflow:

nextflow run --infile $PWD/mybedfile --ftype bed --spp cow --outfolder $PWD/ibstree --bootstrap 100