thakkinen/bioinformatics repository overview

Note: These containers are not intended to be ran as is, but rather form workflow language e.g. NextFlow.

centos_7_init: GCC 7.3.1 devtoolset enabled by default. Used as base to build other bioinformatics toolsets.

biobase: Contains samtools 1.9-114-g76e7ed6 , bcftools 1.9-221-gb1426c5, tabix 1.9-293-g5e83884-dirty , htslib 1.9-293-g5e83884-dirty, bedtools v2.28.0, picard 2.20.5-8-g05211a3-SNAPSHOT, fastqc v0.11.8, python 3.6, cutadapt 2.4, TBB 2019 U8, Bowtie 2 version 2.3.5.1