thanhleviet/abricate repository overview

This docker runs abricate tools to find resistant genes and virulent factors for contigs fasta files. Please refer https://github.com/tseemann/abricate⁠ for usage.

To run this docker:

Assuming you have a folder of fasta files named data, the command to run docker based abricate: cd path/to/data directory docker run --rm -it -v $(pwd):/data/ thanhleviet/abricate abricate *.fa > res_results.tab