tiagoantao/alpine-base repository overview

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⁠A Data Science core based on Docker containers

⁠Warning

virtual-core isn't maintained anymore!

⁠Summary

Here you can find a set of containers to help creating a data science core architecture, for example:

• LDAP server
• PostgreSQL server
• NFS server (Not active)
• Samba server (for integration with sequencer technology like Illumina)
• Galaxy server
• Zabbix server
• Software server (i.e. a lot of pre-installed software)
• Interative Compute server (a place for users to login)
• Exploratory Analysis server (JupyterHub with JupyterLab)
• SLURM grid configuration

There is a focus on bioinformatics, but the infrastructure can be used for other applications.

⁠Installation

Please check the project documentation_.

⁠Acknowledgements

The sequencer Samba file configuration was originally inspired on David Personette's Samba container_. It is currently completely different.

The current Galaxy configuration is based on Björn Grüning's Galaxy container_.

⁠Author and License

Copyright by Tiago Antao. Licensed under GNU Affero General Public License version 3.

.. _project documentation: http://virtual-core.rtfd.io/⁠ .. _Galaxy container: https://github.com/bgruening/docker-galaxy-stable⁠ .. _Samba container: https://github.com/dperson/samba⁠