containerizing AnantharamanLab/METABOLIC see https://github.com/tin6150/metaboliic.git
start with a docker base may conver to singularity to run in HPC...
work in progress...
TBD
container building
RUN
===
::
docker run -it -v $HOME:/home/tin tin6150/metabolic
docker exec -it uranus_hertz bash # additional terminal into existing running container
testing use:
docker run -it -v $HOME:/home/tin tin6150/base4metabolic
docker run -it -v $HOME:/home/tin tin6150/perl4metabolic
BUILD
=====
::
docker build -t tin6150/base4metabolic -f Dockerfile.base . | tee Dockerfile.base.log
docker build -t tin6150/perl4metabolic -f Dockerfile.perl . | tee Dockerfile.perl.log
docker build -t tin6150/metabolic -f Dockerfile.metabolic . | tee Dockerfile.log
-or-
docker build -t tin6150/metabolic0 -f Dockerfile . | tee Dockerfile.monolithic.log
-or-
# alternate starting point, may become independent container if can get docker hub to add new repo...
docker build -t tin6150/bioperl -f Dockerfile.bioperl . | tee Dockerfile.bioperl.log
Content type
Image
Digest
Size
308.2 MB
Last updated
over 6 years ago
docker pull tin6150/bioperl