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tin6150/bioperl

By tin6150

Updated over 6 years ago

Image
0

247

tin6150/bioperl repository overview

metaboliic

containerizing AnantharamanLab/METABOLIC see https://github.com/tin6150/metaboliic.git

start with a docker base may conver to singularity to run in HPC...

work in progress...

Running Metabolic

TBD

container building



RUN
===

::

        docker run  -it -v $HOME:/home/tin tin6150/metabolic
        docker exec -it uranus_hertz bash                 # additional terminal into existing running container

		testing use:
        docker run  -it -v $HOME:/home/tin tin6150/base4metabolic
        docker run  -it -v $HOME:/home/tin tin6150/perl4metabolic


BUILD
=====

::

        docker build -t tin6150/base4metabolic  -f Dockerfile.base       .  | tee Dockerfile.base.log 
        docker build -t tin6150/perl4metabolic  -f Dockerfile.perl       .  | tee Dockerfile.perl.log 
        docker build -t tin6150/metabolic       -f Dockerfile.metabolic  .  | tee Dockerfile.log 
        -or-
        docker build -t tin6150/metabolic0      -f Dockerfile            .  | tee Dockerfile.monolithic.log 
        -or-
        # alternate starting point, may become independent container if can get docker hub to add new repo...
        docker build -t tin6150/bioperl         -f Dockerfile.bioperl    .  | tee Dockerfile.bioperl.log 




Tag summary

Content type

Image

Digest

Size

308.2 MB

Last updated

over 6 years ago

docker pull tin6150/bioperl