tomkellygenetics/universcafe repository overview

⁠UniverSCAFE

⁠UniverSC + SCAFE = UniverSCAFE

Single-cell processing across technologies with analysis of five-prime ends

This provides a docker container with both UniverSC⁠ and SCAFE⁠ installed in a Linux environment.

⁠Citing UniverSC

S. Thomas Kelly and Kai Battenbery et al. UniverSC: a flexible cross-platform single-cell data processing pipeline bioRxiv 2021.01.19.427209⁠

⁠Citing SCAFE

Jonathan Moody and Tsukasa Kouno et al. Profiling of transcribed cis-regulatory elements in single cells. bioRxiv 2021.04.04.438388⁠