trust1/mysqlbank repository overview

The MySQL has collection of de novo assembled exons of different Australian species. Those specimens were processed trough exon capture short read sequencing protocols. Database named exon consists of two major tables: fasta and samplebank.

To duplicate this database on PAWSEY or Nectar environment.

1. Create new dedicated virtual machine or use preexisted one with Ubuntu. Remember to allow access trough port 22 (ssh) and 3306 (mySQL) adding those to the security rules.

2. Mount data volume at

/mnt/data/

Create storage and working directory for mySQL :

mkdir /mnt/data/MySQL

1. Fire container with docker command:

sudo docker run -p 3306:3306 -v /mnt/data/MySQL:/var/lib/mysql --name mysqlbank -it trust1/mysqlbank:v0.0.0