trust1/rbox4met repository overview

⁠Based on Ubuntu 20.04.2 LTS image topped with R environment // R version 4.0.3 (2020-10-10) //

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Environment for R work with Methylation array data

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⁠R libraries installed:

• minfi
• caret
• dplyr
• plotly
• RANN
• knitr
• kableExtra
• IlluminaHumanMethylationEPICmanifest
• IlluminaHumanMethylationEPICanno.ilm10b4.hg19 #That is the killer: 10GB RAM may needed
• RFpurify
• LUMP

Some extra stuff:

• conumee
• heatmaply

V1.1 added meffil package