ummidock/circlator_sanger-pathogens
Circlator: A tool to circularize genome assemblies
Image
Machine learning & AI
Data science
0
271
ummidock/circlator_sanger-pathogens repository overview
docker-circlator_sanger-pathogens
Docker image with Circlator software (GitHub page).
Circlator: A tool to circularize genome assemblies
Usage
You can download and run this image using the following commands:
# Get Docker image
docker pull ummidock/circlator_sanger-pathogens:v1.5.3
# Run Circlator
## Given an assembly assembly.fasta in FASTA format and corrected PacBio reads in a file called reads, run
docker run --rm -u $(id -u):$(id -g) -it -v /local/folder/data:/data/ ummidock/circlator_sanger-pathogens:v1.5.3 circlator all /data/assembly.fasta /data/reads /data/circlator_output/
For more examples see Circlator GitHub
Image Content
This Docker image contains:
Tag summary
Content type
Image
Digest
Size
545.5 MB
Last updated
over 8 years ago
docker pull ummidock/circlator_sanger-pathogens:v1.5.3