uomsystemsbiology/budden2014predictive repository overview

⁠Overview

This is the reference environment for the manuscript 'Predictive modelling of gene expression from transcriptional regulatory elements'⁠ (Budden, D. M., Hurley, D. G. & Crampin, E. J. Predictive modelling of gene expression from transcriptional regulatory elements. Brief. Bioinform. bbu034 (2014). doi:10.1093/bib/bbu034. It executes code to reproduce specific results described in the manuscript. You can find more information about this research at the project page here⁠.

To find other versions of this reference environment, see Other Links below. To learn more about reference environments, see the detailed description here⁠.

⁠Instructions for use

This version of the reference environment is a Docker container. To use it, install Docker⁠, then do:

$ sudo docker pull uomsystemsbiology/budden2014predictive
$ sudo docker run uomsystemsbiology/budden2014predictive /sbin/my_init -- ./run_experiments.sh
$ sudo docker run uomsystemsbiology/budden2014predictive /sbin/my_init -- ./generate_figures.sh

This will start the container and execute scripts to reproduce the results described in the manuscript.

⁠Other links

Manuscript link⁠

Project page link⁠

Vagrant-managed virtual machine⁠

Bootable ISO⁠