An Efficient Design of a Next Generation Sequencing pipeline with Apache Spark
831
A container with bde2020/spark-master as starting point (which is inside the Docker Swarm in order to obtain Spark over HDFS https://github.com/big-data-europe/docker-hadoop-spark-workbench); this is the basis in order to deliver a Genomic Pipeline using GATK, which indeed requires Spark over HDFS
Software Versions:
Apache Spark 2.2 GATK 4.0 & 3.8
Content type
Image
Digest
Size
2 GB
Last updated
over 8 years ago
docker pull vzzarr/spark-master:gatk4_0_2