[{"_1":2,"_160":-5,"_161":-5},"loaderData",{"_3":4,"_17":18,"_25":26,"_139":140},"root",{"_5":-5,"_6":-7,"_7":8,"_9":-7,"_10":11,"_12":-7,"_13":14,"_15":16},"currentUser","primaryEmail","siteVerification","6LeIxAcTAAAAAJcZVRqyHh71UMIEGNQ_MXjiZKhI","toast","enableDev",false,"incidentStatus","theme","system","contrast","normal","routes/_layout",{"_19":-5,"_20":21,"_22":21,"_23":11,"_24":21},"username","isAskGordonEnabled",true,"isUsingNewTemplate","showMinimalLanding","showHoneypotTrap","routes/_layout.r.$namespace.$reponame",{"_27":28,"_29":-5,"_30":11,"_31":11,"_32":33,"_34":35,"_36":-5,"_37":11,"_38":39,"_88":-5,"_89":90,"_128":-5,"_129":11,"_130":21,"_131":11,"_132":-5,"_133":11,"_134":-5,"_135":136,"_137":91,"_138":-7},"canonicalUrl","https://hub.docker.com/r/wenh06/cinc2022/tags","mcpServer","canSeeDockerfile","canSeeAutobuilds","namespace","wenh06","reponame","cinc2022","cloudBuildSource","isAutobuildsAvailable","repo",{"_40":41,"_42":43,"_45":46,"_47":48,"_49":11,"_50":51,"_52":53,"_54":55,"_57":35,"_32":33,"_58":59,"_60":44,"_61":62,"_63":64,"_65":66,"_67":-5,"_68":62,"_69":70,"_71":11,"_72":33,"_73":74,"_79":11,"_80":81,"_85":33,"_86":87},"categories",[],"content_types",[44],"image","date_registered","2022-10-14T04:11:09.669238Z","description","","is_private","last_updated","2023-06-15T09:57:16.782882Z","last_modified","2024-10-16T13:48:34.145251Z","media_types",[56],"application/vnd.docker.container.image.v1+json","name","pull_count",196,"repository_type","star_count",0,"status",1,"status_description","active","source","collaborator_count","full_description","# CinC2022\n\n![docker-ci-and-test](https://github.com/wenh06/cinc2022/actions/workflows/docker-test.yml/badge.svg?branch=docker-test)\n![format-check](https://github.com/wenh06/cinc2022/actions/workflows/check-formatting.yml/badge.svg)\n\nHeart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022\n\n\n\n- [Knowledge about Heart Murmur](#knowledge)\n- [The Conference](#the-conference)\n - [Conference Paper](#conference-paper)\n - [Conference Poster](#conference-poster)\n- [Final Scores](#final-scores)\n- [Top Team Papers](#top-team-papers)\n- [Official Phase Leaderboards](#official-phase-leaderboards)\n- [Miscellaneous](#miscellaneous)\n\n\n\n## Knowledge about Heart Murmur\n\n[utils/HeartMurmur.md](utils/HeartMurmur.md) contains knowledge about heart murmur collected from various sources.\n\n## The Conference\n\n[Conference Website](https://events.tuni.fi/cinc2022/)\n\n[Conference Program](https://cinc.org/prelim_program_2022/)\n\n### Conference Paper\n\n

Click to view!

\n\n~~Folder [tex](tex) contains latex source code for the CinC2022 conference paper, written using [Overleaf](https://www.overleaf.com/).~~\n\nMoved to another repository as the size of the whole repository exceeds the limit of [Overleaf](https://www.overleaf.com/).\n\n

\n\n[Preprint](https://cinc.org/2022/Program/accepted/130_Preprint.pdf)\n\n### Conference Poster\n\nPoster created with `baposter` using the [Overleaf template](https://www.overleaf.com/latex/examples/poster-for-conference-niweek-2014-example/pzbtqgpvdbfh#.V7xgS02LRaQ)\n\n

Click to view!

\n\n $\"poster\"$ \n\n

\n\n## Final Scores\n\nFinal scores are released in [https://physionetchallenges.org/2022/results/](https://physionetchallenges.org/2022/results/) in 5 `.tsv` files.\n\nThese files were gathered in one [`.xlsx` file](results/final_scores.xlsx),\nwhich was uploaded into [Google Sheets](https://docs.google.com/spreadsheets/d/17RPPzMTV9WW0QHToIvFEfhHw47LYx3LgQZxJSeDElzg/edit?usp=sharing).\n\n

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\n\n~~Final score files would keep on changing for some time as unofficial teams are having their rebuttals against the organizers.~~\n\nFinal score files were frozen from 2022/09/18 (Updated again....).\n\nOne can load the 5 tables all at once via\n\n```python\npd.read_excel(\"./results/final_scores.xlsx\", engine=\"openpyxl\", sheet_name=None)\n```\n\nOne can get a digest of the scores and rankings of all metrics (Weighted Accuracy, Cost, etc.) for the murmur task and the outcome task via\n\n```python\nfrom utils._final_results import get_team_digest\n\nget_team_digest(\"Revenger\", fmt=\"pd\", latest=True) # pandas DataFrame format\nget_team_digest(\"Revenger\", fmt=\"tex\", latest=True) # latex format (string)\n```\n\n

\n\n## Top Team Papers\n\n

Click to view!

\n\n* [CUED_Acoustics](https://cinc.org/2022/Program/accepted/20_Preprint.pdf)\n* [HearHeart](https://cinc.org/2022/Program/accepted/165_Preprint.pdf)\n* [HearTech](https://cinc.org/2022/Program/accepted/439_Preprint.pdf)\n* [prna](https://cinc.org/2022/Program/accepted/309_Preprint.pdf)\n* [CeZIS](https://cinc.org/2022/Program/accepted/67_Preprint.pdf)\n* [CAU_UMN](https://cinc.org/2022/Program/accepted/71_Preprint.pdf)\n* [Melbourne Kangas](https://cinc.org/2022/Program/accepted/310_Preprint.pdf)\n\n

\n\n## Official Phase Leaderboards\n\n[Murmur](https://docs.google.com/spreadsheets/u/0/d/e/2PACX-1vRNBATogMRsfio3938bU4r6fcAad85jNzTbSRtRhQ74xHw9shuYoP4uxkK6uKV1zw8CKjPC3AMm33qn/pubhtml/sheet?headers=false&gid=0)\n\n[Outcome](https://docs.google.com/spreadsheets/u/0/d/e/2PACX-1vRNBATogMRsfio3938bU4r6fcAad85jNzTbSRtRhQ74xHw9shuYoP4uxkK6uKV1zw8CKjPC3AMm33qn/pubhtml/sheet?headers=false&gid=1883863848)\n\n

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\n\nThe leaderboards can be loaded via\n\n```python\n# beautifulsoup4 and html5lib required\nimport pandas as pd\n\noutcome_url = \"https://docs.google.com/spreadsheets/u/0/d/e/2PACX-1vRNBATogMRsfio3938bU4r6fcAad85jNzTbSRtRhQ74xHw9shuYoP4uxkK6uKV1zw8CKjPC3AMm33qn/pubhtml/sheet?headers=false&gid=1883863848\"\nmurmur_url = \"https://docs.google.com/spreadsheets/u/0/d/e/2PACX-1vRNBATogMRsfio3938bU4r6fcAad85jNzTbSRtRhQ74xHw9shuYoP4uxkK6uKV1zw8CKjPC3AMm33qn/pubhtml/sheet?headers=false&gid=0\"\n\ndf_outcome = pd.read_html(outcome_url, flavor=\"bs4\", header=[1], index_col=[0])[0].reset_index(drop=True).dropna()\ndf_outcome.Rank = df_outcome.Rank.astype(int)\n# df_outcome.set_index(\"Rank\", inplace=True) # Rank has duplicates\ndf_murmur = pd.read_html(murmur_url, flavor=\"bs4\", header=[1], index_col=[0])[0].reset_index(drop=True).dropna()\ndf_murmur.Rank = df_murmur.Rank.astype(int)\n# df_murmur.set_index(\"Rank\", inplace=True) # Rank has duplicates\n```\n\npattern for the content of email announcing the submission scores:\n\n```python\nfrom string import punctuation\n\nteam_name_pattern = f\"\"\"[\\\\w\\\\s{punctuation}]+\"\"\"\nemail_pattern = (\n f\"\"\"We processed an entry from Team (?P{team_name_pattern}) \"\"\"\n \"\"\"for the Official phase of the George B\\\\. Moody PhysioNet Challenge 2022\\\\. \"\"\"\n \"\"\"This entry was submitted on (?P[\\\\d]{1,2}/[\\\\d]{1,2}/2022 [\\\\d]{1,2}:[\\\\d]{1,2}:[\\\\d]{1,2} ET) \"\"\"\n f\"\"\"with ID (?P{team_name_pattern}_[\\\\d]{{1,5}}_[\\\\d]{{1,3}})\\\\.[\\\\n]+\"\"\"\n \"\"\"We successfully evaluated your entry, which received the score (?P[\\\\d\\\\.]+) and \"\"\"\n \"\"\"(?P[\\\\d\\\\.]+) using the Challenge evaluation metric on the validation set\\\\. \"\"\"\n \"\"\"This entry was your team's (?P[\\\\d]{1,2})/10 entry for the Official phase\\\\.\"\"\"\n)\n# usage:\n# list(re.finditer(email_pattern, email_content))[0].groupdict()\n```\n\n

\n\n## Miscellaneous\n\n

Click to view!

\n\n### Test Files\n\nThe file [`test_docker.py`](test_docker.py) along with the [docker CI action](.github/workflows/docker-image.yml) can almost guarantee that the Challenge submissions won't raise errors, except for CUDA (GPU) errors. For possible CUDA errors, detect with [`test_local.py`](test_local.py).\n\n### Python Re-Implementation of Springer's PCG Features Extractor\n\n[`pcg_springer_features`](https://github.com/DeepPSP/pcg_springer_features) re-implements the feature extraction part of [David Springer's logistic regression-HSMM-based reart sound segmentation algorithm](https://physionet.org/content/hss/1.0/).\n\nInside [utils](utils) there's also a copy of `pcg_springer_features`.\n\n### [Docker Image](https://hub.docker.com/repository/docker/wenh06/cinc2022)\n\n![docker-ci](https://github.com/wenh06/cinc2022/actions/workflows/docker-image.yml/badge.svg?branch=docker-ci)\n\nA Docker image was built and pushed to [Docker Hub](https://hub.docker.com/repository/docker/wenh06/cinc2022) using [GitHub Action](.github/workflows/docker-image.yml).\n\n

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