wipp/wipp-simple-python-thresh repository overview

⁠Simple Python Thresholding plugin - Tutorial sample plugin

Simple example of a WIPP plugin performing thresholding on a folder of images according to a provided threshold value. Reads and outputs tiled TIFF images.

To run, execute the following command:

docker run -v "$PWD"/sample-data:/data \
	wipp/wipp-simple-python-thresh:0.0.1 \
	--inputImages /data/inputs \
	--threshold 1000 \
	--output /data/outputs

(assuming your current working directory contains a folder named sample-data with one sub-folder named inputs with the input images, and one empty sub-folder named outputs)