woffee/java7 repository overview

FROM openjdk:7

RUN apt-get update && apt-get -y install git wget gzip unzip libdbi-perl ant

SHELL ["/bin/bash", "-c"]


RUN cd / && git clone https://github.com/Woffee/sbfl.git && \
   cd sbfl &&  \ 
   chmod +x /sbfl/setup.sh && \
   chmod +x /sbfl/sbfl.sh  && \
   chmod +x /sbfl/gzoltar/run_gzoltar.sh && \
   chmod +x /sbfl/analysis/pipeline-scripts/previously-studied-flts/sbfl.sh && \
   chmod +x /sbfl/analysis/pipeline-scripts/crush-matrix && \
   ./setup.sh && source ~/.bashrc

FROM openjdk:7

RUN apt-get update && apt-get -y install git wget gzip unzip libdbi-perl ant

SHELL ["/bin/bash", "-c"]


RUN cd / && git clone https://github.com/Woffee/sbfl.git && \
   cd sbfl &&  \ 
   chmod +x /sbfl/setup.sh && \
   chmod +x /sbfl/sbfl.sh  && \
   chmod +x /sbfl/gzoltar/run_gzoltar.sh && \
   chmod +x /sbfl/analysis/pipeline-scripts/previously-studied-flts/sbfl.sh && \
   chmod +x /sbfl/analysis/pipeline-scripts/crush-matrix && \
   ./setup.sh && source ~/.bashrc

ARG PYTHON_VERSION=3.7
RUN wget https://repo.continuum.io/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh  && \
   chmod +x ~/miniconda.sh && \
   ~/miniconda.sh -b -p /opt/conda && \
   rm ~/miniconda.sh && \
   /opt/conda/bin/conda install -y python=$PYTHON_VERSION numpy pandas && \
   /opt/conda/bin/conda clean -ya

ENV PATH /opt/conda/bin:$PATH