yanglab/ribocode_ribominer repository overview

⁠RiboCode and RiboMiner

RiboCode in GitHub⁠
RiboMiner in GitHub⁠

⁠Content

• Install Docker⁠
• Download image⁠
• Start a container⁠
• Enter the container⁠
• Test ⁠
• Exit the container⁠
• Stop the container ⁠

⁠Install Docker

Click here⁠

System requirement:

• Mac: 2010 or newer model
• Linux: kernel 3.10 or higher
• Windows: 10 pro及以上 (64位)

⁠Download image

docker pull yanglab/ribocode_ribominer

⁠Start a container

Prepare the data in the path:~/Desktop/bioinfo_tsinghua_share
The directory will bind into: /home/test/share, so you can access your data in container.

# Start a container
docker run --name=ribocode_ribominer -dt  -h yanglab --restart unless-stopped -v ~/Desktop/bioinfo_tsinghua_share:/home/test/share yanglab/ribocode_ribominer

⁠Enter the container

docker exec -it ribocode_ribominer bash

⁠Test

RiboCode -h
RiboDensityOfDiffFrames -h

# The directory
ls /home/test/share

⁠Exit the container

exit

⁠Stop the container

docker stop ribocode_ribominer